・Chen H, Chen C-Y, Shao K-T*. Recovery and variation of the coastal fish community following a cold intrusion event in the Penghu Islands, Taiwan. Plos One 15(9): e0238550, September 2020.
・Ho L-T, Wang S-C, Shao K-T, Chen I-S, Chen H*. A long-term monitoring dataset of fish assemblages in rocky tidepools on the northern coast of Taiwan. Scientific Data 7: 84, March 2020.
・Chen H*. Bayesian inference of environmental effects on seaweed production in Japan via a production-environmental suitability model. Botanical Studies 60(1): 2, December 2019.
・Nagai S*, Chen H, Kawakami Y, Yamamoto K, Sildever S, Kanno N, Oikawa H, Yasuike M, Nakamura Y, Hongo Y, Fujiwara A, Kobayashi T, Gojobori T. Monitoring of the toxic dinoflagellate Alexandrium catenella in Osaka Bay, Japan using a massively parallel sequencing (MPS) - based technique. Harmful Algae 89: 101660, November 2019.
・Cheng C-E, Chen H*. Exploring the influence of geohistorical and environmental factors on the diversity distribution of woody plants in Taiwan from an agricultural perspective. Crop, Environment and Bioinformatics 16(3): 109-119, September 2019. In Chinese.
・Chen H*, Liu C-J, Liu C-F, Hu C-Y, Hsiao M-C, Chiou M-T, Su Y-S, Tsai H-T. A growth model to estimate shoot weights and leaf numbers in tea. Agronomy Journal 111(5): 2255-2262, September 2019.
・Chen H*. Global coral species diversity and its relationship with environmental factors. The 62nd International Statistical Institute World Statistics Congress, August 2019.
・Chen H*, Hsieh M-H, Liu L-Y D. Incorporation of solar radiation and temperature to estimate production of field growing iceberg lettuce. Crop, Environment and Bioinformatics 16(2): 98-108, June 2019.
・Chen H*, Chen C-Y, Shao K-T, Gong G-C. Spatial and temporal variations in species diversity of fish assemblages near a sewage treatment plant in northern Taiwan. Fisheries Science 85(3): 581-590, May 2019.
・Chen H*, Long-term temporal trends of cabbage, napa cabbage, and lettuce yields and their spatial patterns in Japanese prefectures. Journal of the Taiwan Society for Horticultural Science 65(1): 25-36, March 2019.
・Lee S, Chen H*. The spatial pattern in yearly trends of rice production in Taiwan. Crop, Environment and Bioinformatics 15(4): 215-222, December 2018. In Chinese.
・Chen H*. The spatial patterns in long-term temporal trends of three major crops' yields in Japan. Plant Production Science 21(3): 177-185, August 2018.
・Chen H, Chen C-Y, Shao K-T*. Time series dataset of fish assemblages near thermal discharges at nuclear power plants in northern Taiwan. Scientific Data 5:180085, May 2018.
・Chen H*. Geohistorical and environmental factors on spatial pattern of grass plants (Poaceae) species richness in Taiwan. Weed Science Bulletin 38(2): 159–167, December 2017.
・Nagai S*, Urushizaki S, Hongo Y, Chen H, Dzhembekova N. An attempt to semi-quantify potentially toxic diatoms of the genus Pseudo-nitzschia in Tokyo Bay, Japan by using massively parallel sequencing technology. Plankton and Benthos Research 12(4): 248-258, November 2017.
・Chen H*, Nagai S. Phylogenetically clumped species composition of marine green algae (Chlorophyta) in the temperate zone. Journal of Marine Science and Technology 25(4): 482–488, August 2017.
・Chen H*, Nagai S, Shao K-T, Kishino H. The method to detect the phylogenetic aggregation of the patterns of species temporal variation in an assemblage. The Proceedings of the 2017 International Forum–Agriculture, Biology, and Life Science, June 2017.
・Nagai S*, Urushizaki S, Yasuike M, Fujiwara A, Chen H, Katakura S. First appearance record of noxious red tide algae in the Okhotsk Sea. The Proceedings of the 32nd International Symposium on Okhotsk Sea & Polar Oceans, February 2017.
・Lee H-I, Chen H, Kishino H, Liao C-T*. A reference-population-based conformance proportion. Journal of Agricultural, Biological, and Environmental Statistics 21(4): 684–697, December 2016.
・Chen H*. Modeling the impact of global warming on rice yield in Japan. Crop, Environment and Bioinformatics 13(2): 80–96, June 2016.
・Chen H*, Shao K-T, Kishino H. Bayesian hierarchical ANOVA model of stochastic seasonality for Diodon holocanthus in northern Taiwan. Journal of Marine Science and Technology 24(2): 303–310, April 2016.
・Chen H*, Nagai S, Kishino H. Assessment of the network of protected areas for birds in Taiwan with regard to functional and phylogenetic diversity. Pacific Conservation Biology 22(1): 61–71, March 2016.
・Chen H, Liao Y-C, Chen C-Y, Tsai J-I, Chen L-S, Shao K-T*. Long-term monitoring dataset of fish assemblages impinged at nuclear power plants in northern Taiwan. Scientific Data 2: 150071, December 2015.
・Chen H, Kishino H*. Hypothesis testing of inclusion of the tolerance interval for the assessment of food safety. Plos One 10(10): e141117, October 2015.
・Chen H*, Kishino H. Global pattern of phylogenetic species composition of shark and its conservation priority. Ecology and Evolution 5(19): 4455–4465, October 2015.
・Chen H*. Statistical modeling of marine community diversity, soil fertility, and food safety testing (supervised by Dr Kishino H). PhD dissertation, The University of Tokyo, March 2015.
・Chen H, Shao K-T, Kishino H*. Phylogenetic skew: an index of community diversity. Molecular Ecology 24(4): 759–770, February 2015.
・Chen H, Yamagishi J, Kishino H*. Bayesian inference of baseline fertility and treatment effects via a crop yield-fertility model. Plos One 9(11): e112785, November 2014.
・Chen H*. Cluster analyses of fish assemblages using the impingement data at the first and the second nuclear power plant in Taiwan: temporal changes (supervised by Dr Liu L-Y). MS thesis, National Taiwan University, June 2011.